
Package index
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ansi_aware_handler() - Pretty Printing
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bind_mediation() - Convert
mediation_datato a single data.frame
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bootstrap() - Bootstrap Distribution for Estimators
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brms_model() - Bayesian Regression Model across Responses
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brms_sampler() - Sample from a Bayesian Regression Model
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contrast_predictions() - Estimate the Difference between Profiles
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contrast_samples() - Difference between Samples at Contrasting Profiles
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demo_joy() - A Demo Dataset (Random)
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demo_spline() - A Demo Dataset (Spline)
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direct_effect() - Direct Effects from Estimated Model
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edges(<multimedia>) - Access Mediation Model DAG
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edges() - Graphical Structure for Mediation Objects
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effect_summary() - Average Effects across j
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estimate() - Estimate a Mediation Model
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estimator(<model>) - Accessor for Estimators
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estimator() - Accessor for Model Estimators
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exper_df() - Convert a Summarized Experiment to a data.frame
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fdr_summary() - Calibration using Synthetic Nulls
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glmnet_model() - Regularized 'Glmnet' Model across Responses
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glmnet_sampler() - Sample from a 'Glmnet' Package Model
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indirect_overall() - Overall Indirect Effect
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indirect_pathwise() - Indirect Effects via Single Mediation Paths
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lm_model() - Linear Model across Responses
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lm_sampler() - Sample a Linear Model
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lnm_model() - Logistic Normal Multinomial Model
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lnm_sampler() - Sample from the Logistic Normal Multinomial
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mediation_data() mediation_dataConstructor
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mediation_models() - Accessor for Outcome Models
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mediators(<mediation_data>) - Access to @mediators in Mediation Data
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mediators(<multimedia>) - Names of Mediators in a Multimedia Object
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`mediators<-`(<mediation_data>) - Set the Mediators in a Mediation Data Object
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`mediators<-`() - Set Mediators
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mediators() - Access Class-Specific Mediators
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mindfulness - Mindfulness Dataset
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model-class - Representation of an Outcome or Mediation Model
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multimedia() multimediaConstructor
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n_mediators() - Number of Mediators in a Multimedia Object
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n_outcomes() - Number of Outcomes in a Multimedia Object
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nrow(<mediation_data>) - How many samples in the mediation dataset?
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null_contrast() - Compare Effects from Experimental vs. Null Mediation Data
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nullify() - Nullify Active Edges
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outcome_model() - Access the Outcome Model in a Multimedia Object
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outcome_models() - Accessor for Outcome Models
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outcomes(<mediation_data>) - Outcomes Data in a Mediation Data Object
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outcomes(<multimedia>) - Names of Outcomes in a Multimedia Object
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`outcomes<-`(<mediation_data>) - Set the Outcomes in a Mediation Data Object
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`outcomes<-`() - Set Outcomes This is an setter method for outcomes in an S4 object, usually of class mediation_data.
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outcomes() - Access Outcomes
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parallelize() - Parallelize Estimation across Responses
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plot_mediators() - Visualize Indirect Effects
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plot_sensitivity() - Generic Sensitivity Plot
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predict(<multimedia>) - Predictions from a Multimedia Class
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predict_across() - Predict a Subset of Responses
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pretreatments(<mediation_data>) - Pretreatments in a Mediation Data Object
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`pretreatments<-`(<mediation_data>) - Set the Pretreatments in a Mediation Data Object
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`pretreatments<-`() - Set Pretreatments This is an setter method for pretreatments in an S4 object, usually of class mediation_data.
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pretreatments() - Access Pretreatments
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retrieve_names() - Variables in a Multimedia Object
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rf_model() - Random Forest Model
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rf_sampler() - Sample from a Random Forest Model
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sample(<multimedia>) - Sample New Mediator/Outcome Data
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sensitivity() - Sensitivity Analysis for Overall Indirect Effect
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sensitivity_pathwise() - Sensitivity Analysis for Pathwise Indirect Effects
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sensitivity_perturb() - Sensitivity to User-Specified Perturbations
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setup_profile() - Define a
treatment_profileobject
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spline_fun() - Generate Random Spline
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`[`(<mediation_data>,<ANY>,<ANY>,<ANY>) - Subset a mediation dataset
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sub_formula() - Helper to Modify Formulas
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treatment_profile-class - Define a Treatment Profile
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treatments(<mediation_data>) - Treatments in a Mediation Data Object
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treatments(<multimedia>) - Names of Treatments in a Multimedia Object
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`treatments<-`(<mediation_data>) - Set the Treatments in a Mediation Data Object
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`treatments<-`() - Set Treatments This is an setter method for treatments in an S4 object, usually of class mediation_data.
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treatments() - Access Treatments