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All functions

ansi_aware_handler()
Pretty Printing
bind_mediation()
Convert mediation_data to a single data.frame
bootstrap()
Bootstrap Distribution for Estimators
brms_model()
Bayesian Regression Model across Responses
brms_sampler()
Sample from a Bayesian Regression Model
contrast_predictions()
Estimate the Difference between Profiles
contrast_samples()
Difference between Samples at Contrasting Profiles
demo_joy()
A Demo Dataset (Random)
demo_spline()
A Demo Dataset (Spline)
direct_effect()
Direct Effects from Estimated Model
edges(<multimedia>)
Access Mediation Model DAG
edges()
Graphical Structure for Mediation Objects
effect_summary()
Average Effects across j
estimate()
Estimate a Mediation Model
estimator(<model>)
Accessor for Estimators
estimator()
Accessor for Model Estimators
exper_df()
Convert a Summarized Experiment to a data.frame
fdr_summary()
Calibration using Synthetic Nulls
glmnet_model()
Regularized 'Glmnet' Model across Responses
glmnet_sampler()
Sample from a 'Glmnet' Package Model
indirect_overall()
Overall Indirect Effect
indirect_pathwise()
Indirect Effects via Single Mediation Paths
lm_model()
Linear Model across Responses
lm_sampler()
Sample a Linear Model
lnm_model()
Logistic Normal Multinomial Model
lnm_sampler()
Sample from the Logistic Normal Multinomial
mediation_data()
mediation_data Constructor
mediation_models()
Accessor for Outcome Models
mediators(<mediation_data>)
Access to @mediators in Mediation Data
mediators(<multimedia>)
Names of Mediators in a Multimedia Object
`mediators<-`(<mediation_data>)
Set the Mediators in a Mediation Data Object
`mediators<-`()
Set Mediators
mediators()
Access Class-Specific Mediators
mindfulness
Mindfulness Dataset
model-class
Representation of an Outcome or Mediation Model
multimedia()
multimedia Constructor
n_mediators()
Number of Mediators in a Multimedia Object
n_outcomes()
Number of Outcomes in a Multimedia Object
nrow(<mediation_data>)
How many samples in the mediation dataset?
null_contrast()
Compare Effects from Experimental vs. Null Mediation Data
nullify()
Nullify Active Edges
outcome_model()
Access the Outcome Model in a Multimedia Object
outcome_models()
Accessor for Outcome Models
outcomes(<mediation_data>)
Outcomes Data in a Mediation Data Object
outcomes(<multimedia>)
Names of Outcomes in a Multimedia Object
`outcomes<-`(<mediation_data>)
Set the Outcomes in a Mediation Data Object
`outcomes<-`()
Set Outcomes This is an setter method for outcomes in an S4 object, usually of class mediation_data.
outcomes()
Access Outcomes
parallelize()
Parallelize Estimation across Responses
plot_mediators()
Visualize Indirect Effects
plot_sensitivity()
Generic Sensitivity Plot
predict(<multimedia>)
Predictions from a Multimedia Class
predict_across()
Predict a Subset of Responses
pretreatments(<mediation_data>)
Pretreatments in a Mediation Data Object
`pretreatments<-`(<mediation_data>)
Set the Pretreatments in a Mediation Data Object
`pretreatments<-`()
Set Pretreatments This is an setter method for pretreatments in an S4 object, usually of class mediation_data.
pretreatments()
Access Pretreatments
retrieve_names()
Variables in a Multimedia Object
rf_model()
Random Forest Model
rf_sampler()
Sample from a Random Forest Model
sample(<multimedia>)
Sample New Mediator/Outcome Data
sensitivity()
Sensitivity Analysis for Overall Indirect Effect
sensitivity_pathwise()
Sensitivity Analysis for Pathwise Indirect Effects
sensitivity_perturb()
Sensitivity to User-Specified Perturbations
setup_profile()
Define a treatment_profile object
spline_fun()
Generate Random Spline
`[`(<mediation_data>,<ANY>,<ANY>,<ANY>)
Subset a mediation dataset
sub_formula()
Helper to Modify Formulas
treatment_profile-class
Define a Treatment Profile
treatments(<mediation_data>)
Treatments in a Mediation Data Object
treatments(<multimedia>)
Names of Treatments in a Multimedia Object
`treatments<-`(<mediation_data>)
Set the Treatments in a Mediation Data Object
`treatments<-`()
Set Treatments This is an setter method for treatments in an S4 object, usually of class mediation_data.
treatments()
Access Treatments