Package index
-
ansi_aware_handler()
- Pretty Printing
-
bind_mediation()
- Convert
mediation_data
to a single data.frame
-
bootstrap()
- Bootstrap Distribution for Estimators
-
brms_model()
- Bayesian Regression Model across Responses
-
brms_sampler()
- Sample from a Bayesian Regression Model
-
contrast_predictions()
- Estimate the Difference between Profiles
-
contrast_samples()
- Difference between Samples at Contrasting Profiles
-
demo_joy()
- A Demo Dataset (Random)
-
demo_spline()
- A Demo Dataset (Spline)
-
direct_effect()
- Direct Effects from Estimated Model
-
edges(<multimedia>)
- Access Mediation Model DAG
-
edges()
- Graphical Structure for Mediation Objects
-
effect_summary()
- Average Effects across j
-
estimate()
- Estimate a Mediation Model
-
estimator(<model>)
- Accessor for Estimators
-
estimator()
- Accessor for Model Estimators
-
exper_df()
- Convert a Summarized Experiment to a data.frame
-
fdr_summary()
- Calibration using Synthetic Nulls
-
glmnet_model()
- Regularized 'Glmnet' Model across Responses
-
glmnet_sampler()
- Sample from a 'Glmnet' Package Model
-
indirect_overall()
- Overall Indirect Effect
-
indirect_pathwise()
- Indirect Effects via Single Mediation Paths
-
lm_model()
- Linear Model across Responses
-
lm_sampler()
- Sample a Linear Model
-
lnm_model()
- Logistic Normal Multinomial Model
-
lnm_sampler()
- Sample from the Logistic Normal Multinomial
-
mediation_data()
mediation_data
Constructor
-
mediation_models()
- Accessor for Outcome Models
-
mediators(<mediation_data>)
- Access to @mediators in Mediation Data
-
mediators(<multimedia>)
- Names of Mediators in a Multimedia Object
-
`mediators<-`(<mediation_data>)
- Set the Mediators in a Mediation Data Object
-
`mediators<-`()
- Set Mediators
-
mediators()
- Access Class-Specific Mediators
-
mindfulness
- Mindfulness Dataset
-
model-class
- Representation of an Outcome or Mediation Model
-
multimedia()
multimedia
Constructor
-
n_mediators()
- Number of Mediators in a Multimedia Object
-
n_outcomes()
- Number of Outcomes in a Multimedia Object
-
nrow(<mediation_data>)
- How many samples in the mediation dataset?
-
null_contrast()
- Compare Effects from Experimental vs. Null Mediation Data
-
nullify()
- Nullify Active Edges
-
outcome_model()
- Access the Outcome Model in a Multimedia Object
-
outcome_models()
- Accessor for Outcome Models
-
outcomes(<mediation_data>)
- Outcomes Data in a Mediation Data Object
-
outcomes(<multimedia>)
- Names of Outcomes in a Multimedia Object
-
`outcomes<-`(<mediation_data>)
- Set the Outcomes in a Mediation Data Object
-
`outcomes<-`()
- Set Outcomes This is an setter method for outcomes in an S4 object, usually of class mediation_data.
-
outcomes()
- Access Outcomes
-
parallelize()
- Parallelize Estimation across Responses
-
plot_mediators()
- Visualize Indirect Effects
-
plot_sensitivity()
- Generic Sensitivity Plot
-
predict(<multimedia>)
- Predictions from a Multimedia Class
-
predict_across()
- Predict a Subset of Responses
-
pretreatments(<mediation_data>)
- Pretreatments in a Mediation Data Object
-
`pretreatments<-`(<mediation_data>)
- Set the Pretreatments in a Mediation Data Object
-
`pretreatments<-`()
- Set Pretreatments This is an setter method for pretreatments in an S4 object, usually of class mediation_data.
-
pretreatments()
- Access Pretreatments
-
retrieve_names()
- Variables in a Multimedia Object
-
rf_model()
- Random Forest Model
-
rf_sampler()
- Sample from a Random Forest Model
-
sample(<multimedia>)
- Sample New Mediator/Outcome Data
-
sensitivity()
- Sensitivity Analysis for Overall Indirect Effect
-
sensitivity_pathwise()
- Sensitivity Analysis for Pathwise Indirect Effects
-
sensitivity_perturb()
- Sensitivity to User-Specified Perturbations
-
setup_profile()
- Define a
treatment_profile
object
-
spline_fun()
- Generate Random Spline
-
`[`(<mediation_data>,<ANY>,<ANY>,<ANY>)
- Subset a mediation dataset
-
sub_formula()
- Helper to Modify Formulas
-
treatment_profile-class
- Define a Treatment Profile
-
treatments(<mediation_data>)
- Treatments in a Mediation Data Object
-
treatments(<multimedia>)
- Names of Treatments in a Multimedia Object
-
`treatments<-`(<mediation_data>)
- Set the Treatments in a Mediation Data Object
-
`treatments<-`()
- Set Treatments This is an setter method for treatments in an S4 object, usually of class mediation_data.
-
treatments()
- Access Treatments