This is a small helepr function to concatenate the colData and assays within SummarizedExperiment objects into a single data.frame. This is not necessary for the essential multimedia workflow, it is only exported for potential independent interest.
Examples
demo_joy() |>
exper_df()
#> ASV1 ASV2 ASV3 ASV4 ASV5 treatment
#> 1 1.4354692420 0.75246061 -0.19318124 -0.81954151 2.1687272723 Treatment
#> 2 0.1366364884 -0.01621241 0.88556168 0.81986097 0.5520854149 Treatment
#> 3 -0.0007021005 0.38926708 -1.56460893 0.37851509 -0.7804893154 Control
#> 4 -0.4885620001 -0.55089060 0.04741716 -0.60572474 -1.7947238906 Treatment
#> 5 -0.4194913681 0.63446208 -1.04270999 -0.75070896 -0.1711691617 Treatment
#> 6 -0.6635161639 -2.55640131 1.71864227 -1.17751891 0.7588329876 Treatment
#> 7 1.1379940488 0.70484405 -0.90610419 1.20664369 1.1636752552 Treatment
#> 8 2.2631410124 0.30460748 1.97810029 1.15096289 1.3353387195 Control
#> 9 -0.9416772527 -1.81836159 -1.03626091 0.75226329 0.1330150735 Treatment
#> 10 -0.2430331490 -0.33416466 0.92462868 0.35901625 -0.8621043421 Control
#> 11 0.8627872138 1.35870613 0.15298730 -0.96310416 0.1793946751 Treatment
#> 12 1.8091556156 -1.33360300 -1.27723010 -1.02945305 -1.1842059842 Treatment
#> 13 -0.3516685888 -0.65980196 0.68846451 -0.56212218 -0.2407523940 Treatment
#> 14 -1.5077575966 -1.36632874 -0.57906962 0.53235713 -0.7989827810 Treatment
#> 15 0.0810570875 0.64455756 -0.80791741 0.73938168 -1.1419811186 Control
#> 16 1.4721453069 0.12021896 -1.62597500 -1.57089704 0.9284590043 Treatment
#> 17 0.3278564189 -2.14044675 0.36118972 -0.83244312 -0.2547066147 Treatment
#> 18 0.5791297026 1.59164435 -0.31415824 -1.90421629 -0.1367485229 Treatment
#> 19 -1.0251035668 0.80146951 -0.63792473 -0.64205360 0.8960560591 Control
#> 20 0.4752507767 1.46858683 -0.48727922 -0.68058448 1.4246665706 Control
#> 21 -2.6375816009 -1.41718985 0.29596934 -0.35262779 0.5739132776 Treatment
#> 22 1.0978591914 0.47353608 -1.21652240 -0.53563705 -0.0367853234 Control
#> 23 1.1813595201 -0.89005096 -1.71720703 0.12669886 0.0085582686 Control
#> 24 1.7002915341 -0.35548540 2.15132630 -0.37395182 0.1621965517 Control
#> 25 0.0504436445 0.45177550 0.06908669 -0.03397225 1.8185346740 Control
#> 26 -0.2889850913 0.59782813 -0.90445636 -0.25851378 -1.4847277765 Treatment
#> 27 -0.6290483071 -0.08808419 -0.79161187 0.73647718 -0.8273039134 Control
#> 28 -0.6154138084 0.88706364 -0.89024037 0.88589250 0.8011981667 Control
#> 29 0.4509577935 -0.52662658 0.72848019 -0.34474319 0.8121667510 Treatment
#> 30 0.1782263483 0.43287846 0.63923671 1.99501840 0.1780518866 Control
#> 31 -0.7559110268 1.11130433 -0.90251632 -1.34534473 -0.3707174783 Control
#> 32 0.0330770114 0.48874380 -0.26701280 1.15850188 -0.9761119506 Control
#> 33 1.2670828333 -1.50621366 0.63961729 -0.02633289 -0.1407214126 Treatment
#> 34 1.8722198360 0.36628310 -0.74211673 -0.22629776 1.1382612183 Treatment
#> 35 0.0679279602 2.11998831 0.98200204 0.80083310 -1.6688172950 Control
#> 36 1.0256807141 1.23615048 0.55417986 0.11923133 1.6289451789 Control
#> 37 1.1847595803 1.48026835 0.05333653 -1.43489568 -2.2136142430 Control
#> 38 0.3184902178 0.35164811 -0.93794207 1.69841272 -0.5218286408 Control
#> 39 1.9662306736 -0.20596155 0.10708209 -1.10420470 1.2498740613 Treatment
#> 40 2.7914883776 -1.96984842 1.56611202 1.27552003 0.2277281438 Control
#> 41 -1.8504501961 -0.42444331 0.27360607 0.17236388 2.1330047748 Treatment
#> 42 0.5347560002 0.55972592 -0.04844703 -1.34991347 1.9332733615 Treatment
#> 43 -0.2577823316 -0.29963079 -0.12844856 2.48748452 1.2585113185 Control
#> 44 0.2793369721 -0.67193775 -0.19937084 -0.61593374 -1.9868656297 Control
#> 45 0.5271148380 0.41561420 0.66671604 0.39242172 0.2219983026 Treatment
#> 46 -0.0350131620 -0.51772139 -0.26673498 -0.99943973 -0.1725943525 Treatment
#> 47 0.0339399984 -0.46721671 1.85748344 0.38640701 -3.0881519922 Control
#> 48 -0.8310491834 1.33540829 -0.96055291 0.53018427 0.0005008653 Treatment
#> 49 -0.2084021276 2.05972135 -0.76806577 1.25154077 0.2591984935 Treatment
#> 50 -1.0026604770 0.36007963 -0.67118089 0.41071011 2.0127999944 Treatment
#> 51 0.3105846938 0.57324616 0.36933560 -1.08781195 -0.1623736283 Treatment
#> 52 -1.4437001210 -0.17266463 -0.20237016 -0.98441379 0.4766637042 Treatment
#> 53 -0.6600575034 -0.23177625 1.72024406 0.64862145 2.0252452707 Treatment
#> 54 -0.4191990796 -0.12208979 0.28213861 -0.88499669 1.3105182471 Treatment
#> 55 -0.2207604871 0.49615655 -0.14282793 0.33401513 -0.5283477983 Control
#> 56 -0.2491353424 -0.19734280 -0.71688387 0.21605796 -0.4131487349 Treatment
#> 57 0.0088186147 1.22456863 -1.17722933 -2.04281582 -0.4133461762 Treatment
#> 58 -0.6964503152 -0.79767447 0.81331498 2.39763101 0.2919063027 Treatment
#> 59 -0.4919798073 0.47296015 1.79571272 2.02862876 0.1078753882 Treatment
#> 60 0.3467045665 -0.26322148 1.31101366 0.90092549 0.9392112545 Control
#> 61 0.6441605332 0.31468826 -0.43706385 -0.45686729 -0.4356229027 Control
#> 62 -0.0060871536 -0.95927984 -0.14801404 -1.40635605 -1.0004008863 Control
#> 63 0.6139957525 2.78627300 -1.10825066 0.33363905 0.2994955267 Treatment
#> 64 0.2795901525 2.19252579 1.97362999 0.48909298 -0.3353482372 Control
#> 65 -1.1397064633 -1.59871696 2.09869967 0.75421355 0.1217997642 Treatment
#> 66 0.9260714028 0.20521114 0.44307997 -2.06963297 0.0530878761 Treatment
#> 67 2.1581168028 1.10005052 0.66320968 1.55310076 0.3086775207 Control
#> 68 -0.6637099512 2.18016354 -1.55458770 0.83030565 -1.1329613016 Treatment
#> 69 0.3654885787 -0.14321414 2.33448249 -1.66330787 0.7390708911 Treatment
#> 70 -0.4957029370 -0.09932915 0.44164445 0.47687835 0.0708298959 Treatment
#> 71 -0.0798237266 1.16408990 0.89782906 -0.23493671 -0.2368641120 Control
#> 72 -0.0347017637 0.03561307 -0.88526454 -0.44411404 1.9208670347 Control
#> 73 -1.8366257310 1.05664022 -0.61683445 -0.41228455 1.0652471318 Treatment
#> 74 0.5030445871 -0.85096977 1.11806658 -0.01198053 1.2336237287 Control
#> 75 0.9581452875 -0.26752721 1.20425244 0.72225629 -1.0325991430 Control
#> 76 0.6958681890 0.13690577 2.21570694 -0.28438372 -0.0877362984 Control
#> 77 0.2071444753 1.84164246 -1.58001358 -0.51915942 0.1074499799 Treatment
#> 78 1.1762604776 0.66605101 -0.62783591 -0.46993636 0.5152709971 Control
#> 79 1.6154410709 0.34560207 -0.53967391 -0.75695688 -1.5571952412 Control
#> 80 -0.4048665719 -0.10366260 -1.60524567 -0.55571660 0.8672501739 Treatment
#> 81 -0.8717413769 -0.70228188 1.02593576 0.71816434 -0.3988941921 Treatment
#> 82 0.4497730673 0.33879857 0.77100026 -0.54382271 -0.8429480374 Control
#> 83 -0.0935213882 0.13670219 0.37351629 0.53816650 0.1561003571 Control
#> 84 -0.6377318697 0.07491232 -0.15355540 0.32717711 -0.1716754051 Treatment
#> 85 0.0191600411 1.19496399 -1.26952820 1.33459201 -0.4659609899 Control
#> 86 0.1961793022 1.42529342 0.71265625 1.09730484 -0.8795958023 Control
#> 87 0.4720259679 0.72237982 -0.24710646 0.13087006 -0.5485113434 Treatment
#> 88 0.8075298839 0.44092616 0.55994859 0.91729091 -1.0048164997 Treatment
#> 89 1.0435391687 -0.98682920 0.59016549 -0.02430508 -0.1273804709 Treatment
#> 90 0.0341276795 -0.40177580 1.23608708 -0.19490015 0.4703092019 Control
#> 91 -0.5776738200 1.35426664 0.52659032 -1.24795118 -0.5497703015 Control
#> 92 -0.2669504184 -0.56450784 -1.00863818 0.07363590 0.9004055434 Treatment
#> 93 -0.6896227922 0.95287807 1.55958102 0.92335320 0.8545314203 Treatment
#> 94 -1.0142521056 -0.38839049 1.20442853 1.32532402 -1.1880837181 Control
#> 95 -0.3066462174 -0.79184009 0.39379603 1.88101749 0.5758979061 Control
#> 96 1.1323807234 -0.22481847 -0.40021213 -1.19067361 -1.0098475797 Control
#> 97 0.9954111437 -1.42139060 -1.97500057 -0.12321264 0.8460633123 Control
#> 98 -0.3279738185 1.99542562 -0.11683845 -0.54505049 -0.6666030797 Control
#> 99 1.1020969289 0.69932250 -0.51037911 -2.06500220 0.8557542689 Treatment
#> 100 -0.3780877896 1.06653580 0.64614490 0.05941876 0.6610819132 Control
#> PHQ
#> 1 1.896493712
#> 2 0.868447518
#> 3 -1.025681688
#> 4 0.898102925
#> 5 -0.306672988
#> 6 -0.533606038
#> 7 -1.111781782
#> 8 -0.190867978
#> 9 0.050167357
#> 10 -0.403509856
#> 11 0.785493610
#> 12 -0.952619436
#> 13 -0.501073935
#> 14 -0.952255122
#> 15 -0.902389858
#> 16 -0.293200114
#> 17 -1.072157242
#> 18 0.366577034
#> 19 -0.659141372
#> 20 -1.326991499
#> 21 0.784043889
#> 22 0.488644560
#> 23 1.035494636
#> 24 -0.002753248
#> 25 -0.972982288
#> 26 0.723619871
#> 27 -1.618396097
#> 28 0.174681084
#> 29 0.231951599
#> 30 1.594942630
#> 31 1.001649101
#> 32 -0.291285746
#> 33 -1.836480184
#> 34 -0.426121589
#> 35 -1.437321397
#> 36 -0.263658245
#> 37 -1.438942063
#> 38 0.555655008
#> 39 -1.693412611
#> 40 -0.510382903
#> 41 0.104948754
#> 42 0.237517764
#> 43 0.043120422
#> 44 1.458972404
#> 45 -0.873313273
#> 46 0.010488831
#> 47 0.721154501
#> 48 0.601501588
#> 49 -1.035660843
#> 50 1.775742775
#> 51 0.071761077
#> 52 0.595039037
#> 53 0.356783326
#> 54 1.164052505
#> 55 -1.906488863
#> 56 1.008290035
#> 57 -1.209478864
#> 58 -1.637900089
#> 59 -0.626973031
#> 60 -0.484370439
#> 61 0.147264696
#> 62 2.596952758
#> 63 -0.759261572
#> 64 0.126698916
#> 65 0.653957723
#> 66 -0.287458782
#> 67 -1.808337016
#> 68 0.069689884
#> 69 -0.751523960
#> 70 0.614066389
#> 71 2.616118633
#> 72 -0.310197247
#> 73 -0.225556509
#> 74 0.895580204
#> 75 2.314944066
#> 76 -1.070841158
#> 77 0.123428339
#> 78 0.205772328
#> 79 -0.941252315
#> 80 0.845274417
#> 81 -1.333634125
#> 82 -2.050314328
#> 83 -0.689944634
#> 84 -0.408879321
#> 85 0.486114912
#> 86 0.415104613
#> 87 -0.439245206
#> 88 -0.997126147
#> 89 -0.718125379
#> 90 0.531715662
#> 91 2.713507671
#> 92 0.310425982
#> 93 -0.278492626
#> 94 0.889777247
#> 95 -0.059815110
#> 96 0.288509261
#> 97 -0.469084811
#> 98 0.302411585
#> 99 -2.730041826
#> 100 -0.614215108