Microbiome Data Analysis

• multimedia - An R package for microbiome data integration using causal mediation analysis.
• miniLNM - A lightweight implementation of the logistic-normal multinomial model for analysis of multivariate count data.
• molpad - Interactive visualization of longitudinal data using the focus-plus-context principle.
• mbtransfer - An R package for modeling and inference of microbial communities under dynamic environmental interventions.
• alto - An R package for multiresolution alignment of topic models. See also the binder examples.
• NBFvis - An R package for neighborhood-informed interactive visualization in spatial ‘omics.
• treelapse - An R package for interactive visualization of time series that can be arranged onto trees
• structSSI - An R package for selective inference in hierarchical data
• Microbiome PLVM - Stan and R code for latent variable modeling of microbiome count data

Ecosystem Monitoring

• Mapping Visualization - A binder link with notebooks explaining the uses of visualization in remote sensing
• Glacier Mapping - A repository containing code for downloading, processing, and building models on glacier data.