This page will include all notes and code examples shared at the start of each class session.

Orientation

1. Review the syllabus + reading list [10 min]
2. Discussion: Introductions and Values Affirmation [15 min]
3. Discussion: Rules and Recommendations [15 min]
4. Writing: Areas of Interest [5 min]

Scientific Motivation

1. Discussion [Muddiest Point]
2. Activity [Reading Summaries]
3. Activity [Data Downloads], (Datasets Repo)
4. Discussion [Translating Statistics -> Omics]

Data Management

1. Discussion [OCAR]
2. Activity [Code Demo] (Compiled Version)
3. Discussion [MultiAssayExperiment Variants]

Hypothesis Testing

1. Background Notes [Dirichlet Process]
2. Activity [Visualization / Examples]
3. Discussion [Questions / Extensions]
4. Background Notes [Knockoffs]
5. Discussion [Clarification]
6. Discussion [Mock Paper Review]

Prediction and Dimensionality Reduction

1. SPLS Background Notes
2. Activity [Debate]
3. Discussion [Distillation]
4. B-RAIL Background Notes
5. Discussion [Uses, Limits, Adaptation]
6. Discussion [Interpretation and Neighborhood Selection]

Generative Models

1. Discussion [Conceptual and Technical Review]

Networks

1. Code Demo (starter, completed, R, compiled)
2. Discussion [Elaboration and Proposals]

Multi-Study Analysis

1. Discussion [Curated Experiments]
2. Code Demos 1 (code, compiled), and 2 (code, starter, compiled)
3. cFIT Background Notes
4. Discussion [Vocabulary and Response]
5. Discussion [Summary and Approach]
6. Discussion [Course Reflection]