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avg_dists()
|
Average Pairwise Distance within Subgraphs |
|
background_prop()
|
Proportion of image that's Background |
|
cell_type()
|
Helper to get Cell Type |
|
data_list()
|
Wrapper to get SCE data |
|
download_data()
|
Download Data for Experiments |
|
entropies()
|
Cluster Entropy of Subgraphs |
|
extract_graph()
|
Extract a KNN Graph from Polygons |
|
fit_wrapper()
|
Helper to Fit Models |
|
generate_model()
|
Multitask Regression Model |
|
graph_stats_cell()
|
Apply fun to Graph Neighborhoods |
|
linked_views()
|
Interactive Linked_Viewss |
|
load_mibi()
|
Load MIBI-ToF into List |
|
loop_stats()
|
Wrapper for Local Statistics |
|
plot_fits()
|
Helper to Plot Model Results |
|
polygonize()
|
Polygonize a Raster Image |
|
raster_stats_cell()
|
Apply fun to Local Neighborhoods |
|
sample_proportions()
|
Division of Samples into Clusters |
|
spatial_subsample()
|
Subsample Rasters |
|
subgraphs()
|
All Subgraphs of a Graph |
|
type_props()
|
Proportion of Cell Types |